O2Stex in iEcHS_1320
- superoxide anion transport via diffusion (extracellular to periplasm)
- o2s_e:-1 ⇌ o2s_p:-1
- Bounds: (-1000.0, 1000.0)
- Universal Reaction: O2Stex
Properties
- Names: superoxide anion transport via diffusion (extracellular to periplasm)[0], superoxide anion transport via diffusion[0,1,2,3,4], TRANS-RXNBWI-115401.ce.maizeexp.SUPER-OXIDE_SUPER-OXIDE[1], TRANS-RXNBWI-115401.cm.maizeexp.SUPER-OXIDE_SUPER-OXIDE[2], -[3,4]
Reaction Participants
| Stoich. | BiGG ID | Name | Reference | x [side] | Compartment | |
|---|---|---|---|---|---|---|
 |
-1 | o2s_e:-1 | superoxide | CHEBI:18421 | - | - |
 |
1 | o2s_p:-1 | superoxide | CHEBI:18421 | - | - |
Gene Reaction Rule
EcHS_A1463 or EcHS_A2354 or EcHS_A0268 or EcHS_A1037
| BiGG ID | Name | |
|---|---|---|
 |
EcHS_A2354 | EcHS A2354 |
|
EcHS_A0268 | EcHS A0268 |
|
EcHS_A1463 | EcHS A1463 |
|
EcHS_A1037 | EcHS A1037 |
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:
There are a total of 5 reversible oxygen-containing reactions (8.77% of all oxygen-containing reactions): O2Stex, EX_o2_e, O2tex, MOX, O2tpp
The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.