O2Stex in iEcolC_1368
- superoxide anion transport via diffusion (extracellular to periplasm)
- o2s_e:-1 ⇌ o2s_p:-1
- Bounds: (-1000.0, 1000.0)
- Universal Reaction: O2Stex
Properties
- Names: superoxide anion transport via diffusion (extracellular to periplasm)[0], superoxide anion transport via diffusion[0,1,2,3,4], TRANS-RXNBWI-115401.ce.maizeexp.SUPER-OXIDE_SUPER-OXIDE[1], TRANS-RXNBWI-115401.cm.maizeexp.SUPER-OXIDE_SUPER-OXIDE[2], -[3,4]
Reaction Participants
| Stoich. | BiGG ID | Name | Reference | x [side] | Compartment | |
|---|---|---|---|---|---|---|
 |
-1 | o2s_e:-1 | superoxide | CHEBI:18421 | - | - |
 |
1 | o2s_p:-1 | superoxide | CHEBI:18421 | - | - |
Gene Reaction Rule
EcolC_2279 or EcolC_1435 or EcolC_3340 or EcolC_2667
| BiGG ID | Name | |
|---|---|---|
 |
EcolC_2667 | OmpF |
|
EcolC_3340 | PhoE |
|
EcolC_2279 | OmpN |
|
EcolC_1435 | OmpC |
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:
There are a total of 5 reversible oxygen-containing reactions (8.77% of all oxygen-containing reactions): O2tex, MOX, O2tpp, O2Stex, EX_o2_e
The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.