iJB785
Synechococcus elongatus PCC 7942 = FACHB-805
- Genome: GCF_000012525.1
- Publication PMID: 27911809
- Part of collection: iJB785
Escher Maps
MEMOTE Report
Consistency
Annotation: SBO Terms
Basic Information
Metabolite Information
Reaction Information
Gene-Protein-Reaction (GPR) Associations
Biomass
Energy Metabolism
Network Topology
Matrix Conditioning
The ratio of the absolute values of the largest coefficient 1080.0 and the lowest, non-zero coefficient 0.0001 is: 1.08E+07.
This test will return the absolute largest and smallest, non-zero coefficients of the stoichiometric matrix. A large ratio of these values may point to potential numerical issues when trying to solve different mathematical optimization problems such as flux-balance analysis. To pass this test the ratio should not exceed 10^9. This threshold has been selected based on experience, and is likely to be adapted when more data on solver performance becomes available. Implementation: Compose the stoichiometric matrix, then calculate absolute coefficients and lastly use the maximal value and minimal non-zero value to calculate the ratio.