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sheme_c:-8 in iPC815
  • siroheme(8-)
  • Charge: -8
  • Formula: C42H36FeN4O16
  • Compartment: c - cytosol
  • Universal Metabolite: sheme
CHEBI:60052
  • siroheme(8-)
  • Type: Small Molecule
  • InChiKey: DLKSSIHHLYNIKN-QIISWYHFSA-D
  • View on ChEBI
Properties
  • Molecular Mass||g/mol: 908.597[0], 908.0[1]
  • SMILES: C[C@@]1(CC(=O)[O-])C2=CC3=[N+]4C(=Cc5c(CCC(=O)[O-])c(CC(=O)[O-])c6[n]5[Fe-2]45[N]2C(=CC2=[N+]5C(=C6)[C@@H](CCC(=O)[O-])[C@]2(C)CC(=O)[O-])[C@H]1CCC(=O)[O-])C(CCC(=O)[O-])=C3CC(=O)[O-][0], C[C@@]1(CC(=O)[O-])/C2=C/c3c(CC(=O)[O-])c(CCC(=O)[O-])c4n3[Fe]N3/C(=C\C5=N/C(=C\4)C(CCC(=O)[O-])=C5CC(=O)[O-])[C@@H](CCC(=O)[O-])[C@](C)(CC(=O)[O-])/C3=C/C(=N2)[C@H]1CCC(=O)[O-][1]
  • Names: siroheme[0,1], siroheme hexaanion[0], [3,3',3'',3'''-[(7S,8S,12S,13S)-3,8,13,17-tetrakis(carboxymethyl)-8,13-dimethyl-7,8,12,13-tetrahydroporphyrin-2,7,12,18-tetrayl-kappaN(21),kappaN(22),kappaN(23),kappaN(24)]tetrapropanoato(10-)]ferrate(6-)[0], Siroheme[1]
Data Sources: [0] CHEBI:60052 via ChEBI, [1] cpd00557 via ModelSEED
Linkouts
Data Sources: [0] CHEBI:60052 via ChEBI, [1] cpd00557 via ModelSEED
MEMOTE Flags
This metabolite was flagged in the following MEMOTE tests:

A total of 110 (7.09%) metabolites are not consumed by any reaction of the model: __iPC815__feoxam_p, __iPC815__apg161_c, __iPC815__valtrna_c, 4h2opntn_c, __iPC815__ascb6p_c, ...

Dead-ends are metabolites that can only be produced but not consumed by reactions in the model. They may indicate the presence of network and knowledge gaps. Implementation: Find dead-end metabolites structurally by considering only reaction equations and bounds. FBA is not carried out.

Reactions involving sheme_c in iPC815
  BiGG ID Name Reference Transport Collection-specific Model
  BiGG ID Name Reference Transport Collection-specific Model