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O2Stex in iPC815
  • superoxide anion transport via diffusion (extracellular to periplasm)
  • o2s_e:-1 ⇌ o2s_p:-1
  • Bounds: (-1000.0, 1000.0)
  • Universal Reaction: O2Stex
Properties
  • Names: superoxide anion transport via diffusion (extracellular to periplasm)[0], superoxide anion transport via diffusion[0,1,2,3,4], TRANS-RXNBWI-115401.ce.maizeexp.SUPER-OXIDE_SUPER-OXIDE[1], TRANS-RXNBWI-115401.cm.maizeexp.SUPER-OXIDE_SUPER-OXIDE[2], -[3,4]
Data Sources: [0] rxn09030 via ModelSEED, [1] rxn29735 via ModelSEED, [2] rxn33031 via ModelSEED, [3] rxn33034 via ModelSEED, [4] rxn33037 via ModelSEED
Linkouts
Data Sources: [0] rxn09030 via ModelSEED, [1] rxn29735 via ModelSEED, [2] rxn33031 via ModelSEED, [3] rxn33034 via ModelSEED, [4] rxn33037 via ModelSEED
Reaction Participants
Stoich. BiGG ID Name Reference x [side] Compartment
-1 o2s_e:-1 superoxide CHEBI:18421 - -
1 o2s_p:-1 superoxide CHEBI:18421 - -
Gene Reaction Rule
YPO1222
BiGG ID Name
YPO1222 YPO1222
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:

There are a total of 5 reversible oxygen-containing reactions (15.15% of all oxygen-containing reactions): O2Stex, EX_o2_e, O2tex, __iPC815__KOKDO_LIPAhexa, O2tpp

The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.