Search for any model, metabolite or reaction by BiGG ID or name.

To search for entries linked to external identifiers, use the format [namespace]:[identifier]. Possible namespaces are: (auto indicates the the enitity type is automatically derived from the identifier.)

  • CHEBI
    • Ex: CHEBI:17790
  • RHEA
    • Ex: RHEA:16505
  • InChIKey
    • The rightmost two parts of the InChIKey can optionally be omitted to search for compounds with different protonation states and different stereochemistries.
    • Ex: InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA-J, InChiKey:ZKHQWZAMYRWXGA-KQYNXXCUSA, InChiKey:ZKHQWZAMYRWXGA-
  • EC / ec-code
    • Partial EC-codes can be provided, optionally with an asterix at the end.
    • Ex: ec-code:4.1.3.27, EC:4.1.3.*,
  • seed (auto), seed.compound, seed.reaction
    • Identifiers can also be entered directly.
    • Ex: cpd00023, seed:cpd00023, seed.reaction:rxn00126
  • kegg (auto), kegg.compound, kegg.reaction
    • Ex: kegg.compound:C00062, kegg:R01086
  • metacyc (auto), metacyc.compound, metacyc.reaction
    • Ex: metacyc:VAL, metacyc:BRANCHED-CHAINAMINOTRANSFERVAL-RXN
  • metanetx (auto), metanetx.chemical, metanetx.reaction
    • Identifiers can also be entered directly.
    • Ex: metanetx:MNXR100289, MNXR100289

BiGGr
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  3. iS_1188
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  5. S2598
Gene
S2598

S2598

  • Model: iS_1188
Associated reactions
  BiGG ID Name Gene reaction rule
ADNt2pp adenosine transport in via proton symport (periplasm) S3164 or S2598
CYTDt2pp cytidine transport in via proton symport (periplasm) S2598 or S3164
DADNt2pp deoxyadenosine transport in via proton symport (periplasm) S3164 or S2598
DCYTt2pp deoxycytidine transport in via proton symport (periplasm) S2598 or S3164
DURIt2pp deoxyuridine transport in via proton symport (periplasm) S3164 or S2598
THMDt2pp thymidine transport in via proton symport (periplasm) S2598 or S3164
URIt2pp uridine transport in via proton symport (periplasm) S2598 or S3164