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O2Stex in iSbBS512_1146
  • superoxide anion transport via diffusion (extracellular to periplasm)
  • o2s_e:-1 ⇌ o2s_p:-1
  • Bounds: (-1000.0, 1000.0)
  • Universal Reaction: O2Stex
Properties
  • Names: superoxide anion transport via diffusion (extracellular to periplasm)[0], superoxide anion transport via diffusion[0,1,2,3,4], TRANS-RXNBWI-115401.ce.maizeexp.SUPER-OXIDE_SUPER-OXIDE[1], TRANS-RXNBWI-115401.cm.maizeexp.SUPER-OXIDE_SUPER-OXIDE[2], -[3,4]
Data Sources: [0] rxn09030 via ModelSEED, [1] rxn29735 via ModelSEED, [2] rxn33031 via ModelSEED, [3] rxn33034 via ModelSEED, [4] rxn33037 via ModelSEED
Linkouts
Data Sources: [0] rxn09030 via ModelSEED, [1] rxn29735 via ModelSEED, [2] rxn33031 via ModelSEED, [3] rxn33034 via ModelSEED, [4] rxn33037 via ModelSEED
Reaction Participants
Stoich. BiGG ID Name Reference x [side] Compartment
-1 o2s_e:-1 superoxide CHEBI:18421 - -
1 o2s_p:-1 superoxide CHEBI:18421 - -
Gene Reaction Rule
SbBS512_E1614 or SbBS512_E0724 or SbBS512_E0238 or SbBS512_E2389
BiGG ID Name
SbBS512_E1614 SbBS512 E1614
SbBS512_E0238 SbBS512 E0238
SbBS512_E0724 SbBS512 E0724
SbBS512_E2389 SbBS512 E2389
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:

There are a total of 5 reversible oxygen-containing reactions (13.16% of all oxygen-containing reactions): MOX, O2tex, O2Stex, O2tpp, EX_o2_e

The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.