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O2t in iYO844
  • O2 transport in via diffusion
  • o2_e:0 ⇌ o2_c:0
  • Bounds: (-999999.0, 999999.0)
  • Universal Reaction: O2t
Properties
  • Names: TRANS-RXNAVI-26568.ce[0,1,2,3,4,5,6,7,8,9,10], EX_o2_e[0,1,2,3,4,5,6,7,8,9,10], O2 transport[0,1,2,3,4,5,6,7,8,9,10], O2 transport (diffusion)[0,1,2,3,4,5,6,7,8,9,10], O2 transport in via diffusion[0,1,2,3,4,5,6,7,8,9,10], O2 transport via diffusion[0,1,2,3,4,5,6,7,8,9,10], Passive diffusion of oxygen[0,1,2,3,4,5,6,7,8,9,10], R_O2u_d[0,1,2,3,4,5,6,7,8,9,10], TRANS-RXN0-474.cp[0,1,2,3,4,5,6,7,8,9,10], Transport of O2[0,1,2,3,4,5,6,7,8,9,10], Transport of oxygen[0,1,2,3,4,5,6,7,8,9,10], o2 transport (diffusion)[0,1,2,3,4,5,6,7,8,9,10], o2 transport via diffusion[0,1,2,3,4,5,6,7,8,9,10], o2transport-diffusion[0,1,2,3,4,5,6,7,8,9,10], oxygen transport via diffusion[0,1,2,3,4,5,6,7,8,9,10], transport of o2 (passive)[0,1,2,3,4,5,6,7,8,9,10], oxygen transport via diffusion (extracellular to periplasm)[1], O2 transport, endoplasmic reticulum[3], Transport of O2, mitochondrial[4], R_TCP25[5], R_TCX12[6], -[8,7], O2 transport (diffusion), nucleus[10]
Data Sources: [0] rxn05468 via ModelSEED, [1] rxn09031 via ModelSEED, [2] rxn09032 via ModelSEED, [3] rxn09641 via ModelSEED, [4] rxn09734 via ModelSEED, [5] rxn31180 via ModelSEED, [6] rxn31196 via ModelSEED, [7] rxn32715 via ModelSEED, [8] rxn32722 via ModelSEED, [9] rxn34182 via ModelSEED, [10] rxn34543 via ModelSEED
Linkouts
Data Sources: [0] rxn05468 via ModelSEED, [1] rxn09031 via ModelSEED, [2] rxn09032 via ModelSEED, [3] rxn09641 via ModelSEED, [4] rxn09734 via ModelSEED, [5] rxn31180 via ModelSEED, [6] rxn31196 via ModelSEED, [7] rxn32715 via ModelSEED, [8] rxn32722 via ModelSEED, [9] rxn34182 via ModelSEED, [10] rxn34543 via ModelSEED
Reaction Participants
Stoich. BiGG ID Name Reference x [side] Compartment
-1 o2_e:0 dioxygen CHEBI:15379 - -
1 o2_c:0 dioxygen CHEBI:15379 - -
MEMOTE Flags
This reaction was flagged in the following MEMOTE tests:

There are a total of 3 reversible oxygen-containing reactions (9.68% of all oxygen-containing reactions): O2t, SPODM_1, DHORDi

The directionality of oxygen-producing/-consuming reactions affects the model's ability to grow anaerobically i.e. create faux-anaerobic organisms. This test reports how many of these oxygen-containing reactions are reversible. This test does not have any mandatory 'pass' criteria. Implementation: First, find the metabolite representing atmospheric oxygen in the model on the basis of an internal mapping table or by specifically looking for the formula "O2". Then, find all reactions that produce or consume oxygen and report those that are reversible.